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I need to stop Mysql server in MAMP PRO and keep Apache running. How can I do that ?

There is a stop button available but it stops all services.

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See my answer here: http://stackoverflow.com/questions/17570010/how-start-stop-mamp-pro-using-command-line/19801925#19801925

You can just use the portion to start/stop MySQL.

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Welcome to Server Fault! Whilst this may theoretically answer the question, it would be preferable to include the essential parts of the answer here, and provide the link for reference. –  Scott Pack Nov 6 '13 at 4:02
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I figured it out...

There is a shell script for that: /Applications/MAMP/bin/stopMysql.sh

If you changed your root password you have to edit this file and change the password in it.

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