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Are the any malware/security scanners out there, that can analyze apache error and access logs and tell me if I have potential risks on my server or if there is unauthorized access etc. ?

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up vote 2 down vote accepted

Have a look at apache-scalp, an Apache log analyzer for security.

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Scalp uses the pattern signatures from PHP-IDS. If you like what scalp does and you are running PHP, you can have it work in real time and block attacks rather than just detecting them. –  Ladadadada Feb 17 '12 at 22:59
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You should check out rootkit hunter and fail2ban. They will do a lot of what you need. Watching the Apache logs seems a little too narrow for my tastes.

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