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I am trying to install Nominatim from its source on github. PostgreSQL 9.1 and PostGIS 2 has already been installed using yum. The system is running CentOS 6.3 with cPanel.

git clone --recursive https://github.com/twain47/Nominatim.git
cd Nominatim
./autogen.sh

Problem: This is when the error occurs as shown below. Any suggestions/idea how this can be fixed? Thanks!!!

autoreconf: Entering directory `.'
autoreconf: configure.ac: not using Gettext
autoreconf: running: aclocal -I osm2pgsql/m4 --output=aclocal.m4t
/usr/share/automake-1.11/Automake/ChannelDefs.pm line 23:

This Perl hasn't been configured and built properly for the threads
module to work.  (The 'useithreads' configuration option hasn't been used.)

Having threads support requires all of Perl and all of the XS modules in
the Perl installation to be rebuilt, it is not just a question of adding
the threads module.  (In other words, threaded and non-threaded Perls
are binary incompatible.)

If you want to the use the threads module, please contact the people
who built your Perl.

Cannot continue, aborting.
BEGIN failed--compilation aborted at /usr/local/lib/perl5/5.8.8/i686-linux/threads.pm line 28.
Compilation failed in require at /usr/share/automake-1.11/Automake/ChannelDefs.pm line 23.
BEGIN failed--compilation aborted at /usr/share/automake-1.11/Automake/ChannelDefs.pm line 26.
Compilation failed in require at /usr/share/automake-1.11/Automake/Configure_ac.pm line 26.
BEGIN failed--compilation aborted at /usr/share/automake-1.11/Automake/Configure_ac.pm line 26.
Compilation failed in require at /usr/bin/aclocal line 39.
BEGIN failed--compilation aborted at /usr/bin/aclocal line 39.
autoreconf: aclocal failed with exit status: 255

Output of perl -V

Summary of my perl5 (revision 5 version 8 subversion 8) configuration:
  Platform:
    osname=linux, osvers=2.6.18-028stab094.3, archname=i686-linux
    uname='linux host.padtrackr.com 2.6.18-028stab094.3 #1 smp thu sep 22 12:47:37 msd 2011 i686 i686 i386 gnulinux '
    config_args='-ds -e -Dprefix=/usr/local -Doptimize=-Os -Duseshrplib -Dusemymalloc=y'
    hint=recommended, useposix=true, d_sigaction=define
    usethreads=undef use5005threads=undef useithreads=undef usemultiplicity=undef
    useperlio=define d_sfio=undef uselargefiles=define usesocks=undef
    use64bitint=undef use64bitall=undef uselongdouble=undef
    usemymalloc=y, bincompat5005=undef
  Compiler:
    cc='cc', ccflags ='-fno-strict-aliasing -pipe -Wdeclaration-after-statement -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include/gdbm',
    optimize='-Os',
    cppflags='-fno-strict-aliasing -pipe -Wdeclaration-after-statement -I/usr/local/include -I/usr/include/gdbm'
    ccversion='', gccversion='4.4.4 20100726 (Red Hat 4.4.4-13)', gccosandvers=''
    intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=12
    ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
    alignbytes=4, prototype=define
  Linker and Libraries:
    ld='cc', ldflags =' -L/usr/local/lib'
    libpth=/usr/local/lib /lib /usr/lib
    libs=-lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc
    perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc
    libc=/lib/libc-2.12.so, so=so, useshrplib=true, libperl=libperl.so
    gnulibc_version='2.12'
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E -Wl,-rpath,/usr/local/lib/perl5/5.8.8/i686-linux/CORE'
    cccdlflags='-fpic', lddlflags='-shared -L/usr/local/lib'


Characteristics of this binary (from libperl):
  Compile-time options: MYMALLOC PERL_MALLOC_WRAP USE_LARGE_FILES
                        USE_PERLIO
  Built under linux
  Compiled at Dec  4 2011 16:39:22
  %ENV:
    PERL5LIB="/home/dev/perl5/lib/perl5/i686-linux:/home/dev/perl5/lib/perl5"
    PERL_LOCAL_LIB_ROOT="/home/dev/perl5"
    PERL_MB_OPT="--install_base /home/dev/perl5"
    PERL_MM_OPT="INSTALL_BASE=/home/dev/perl5"
  @INC:
    /home/dev/perl5/lib/perl5/i686-linux
    /home/dev/perl5/lib/perl5
    /usr/local/lib/perl5/5.8.8/i686-linux
    /usr/local/lib/perl5/5.8.8
    /usr/local/lib/perl5/site_perl/5.8.8/i686-linux
    /usr/local/lib/perl5/site_perl/5.8.8
    /usr/local/lib/perl5/site_perl
    .
share|improve this question
    
What is the output of perl -V? –  Michael Hampton Sep 10 '12 at 5:24
    
Updated original post with the output of perl -V –  Nyxynyx Sep 10 '12 at 5:28

1 Answer 1

up vote 0 down vote accepted

That is not the version of perl which comes with CentOS.

From looking at the output, it seems you have a second version of perl installed in /usr/local and was built by God-only-knows-who. It also appears to be a pretty minimalist version of perl.

As I mentioned before, you really should start over with a CentOS box that hasn't been corrupted by whatever breakage cPanel applies. You will continue to run into problems that are difficult to solve, as long as you use it.

Anyway, try removing /usr/local/bin from your PATH and then building the program. This should ensure that the locally installed Perl doesn't get run, and the system Perl (which works correctly) gets used instead.

share|improve this answer
    
Thanks for the suggestion. Removing /usr/local/bin from /etc/bashrc followed by running bash did not solve the problem. Removing cPanel is a good idea, but that will mean I lose the managed support from the hosting company. –  Nyxynyx Sep 10 '12 at 5:54
    
Oh, you have management, eh? They broke it; make them fix it. –  Michael Hampton Sep 10 '12 at 5:57
    
I have submitted a support ticket regarding this issue. Been learning alot trying to fix things myself before giving up and asking them for help. –  Nyxynyx Sep 10 '12 at 6:02

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