256GB RAM, 64 Core , AMD running Ubuntu 12.04 with Percona MySQL 5.5.28.
Below is the assertion failure. We just had a second assertion failure (different "in file", position, etc) while running a large set of inserts.
After the first failure, MySQL restarted after a reboot only - after continuously looping on the same error after trying to recover.
I decided to do a mysqlcheck with -o for optimize. Since these are all Innodb tables (very large tables, 60+GB) this would do an alter table on all tables.
In the middle of this , the below assertion failure happened again:
121115 22:30:31 InnoDB: Assertion failure in thread 140086589445888 in file btr0pcur.c line 452 InnoDB: Failing assertion: btr_page_get_prev(next_page, mtr) == buf_block_get_page_no(btr_pcur_get_block(cursor)) InnoDB: We intentionally generate a memory trap. InnoDB: Submit a detailed bug report to http://bugs.mysql.com. InnoDB: If you get repeated assertion failures or crashes, even InnoDB: immediately after the mysqld startup, there may be InnoDB: corruption in the InnoDB tablespace. Please refer to InnoDB: http://dev.mysql.com/doc/refman/5.5/en/forcing-innodb-recovery.html InnoDB: about forcing recovery. 03:30:31 UTC - mysqld got signal 6 ; This could be because you hit a bug. It is also possible that this binary or one of the libraries it was linked against is corrupt, improperly built, or misconfigured. This error can also be caused by malfunctioning hardware. We will try our best to scrape up some info that will hopefully help diagnose the problem, but since we have already crashed, something is definitely wrong and this may fail. Please help us make Percona Server better by reporting any bugs at http://bugs.percona.com/ key_buffer_size=536870912 read_buffer_size=131072 max_used_connections=404 max_threads=500 thread_count=90 connection_count=90 It is possible that mysqld could use up to key_buffer_size + (read_buffer_size + sort_buffer_size)*max_threads = 1618416 K bytes of memory Hope that's ok; if not, decrease some variables in the equation. Thread pointer: 0x14edeb710 Attempting backtrace. You can use the following information to find out where mysqld died. If you see no messages after this, something went terribly wrong... stack_bottom = 7f687366ce80 thread_stack 0x30000 /usr/sbin/mysqld(my_print_stacktrace+0x2e)[0x7b52ee] /usr/sbin/mysqld(handle_fatal_signal+0x484)[0x68f024] /lib/x86_64-linux-gnu/libpthread.so.0(+0xfcb0)[0x7f9cbb23fcb0] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35)[0x7f9cbaea6425] /lib/x86_64-linux-gnu/libc.so.6(abort+0x17b)[0x7f9cbaea9b8b] /usr/sbin/mysqld[0x858463] /usr/sbin/mysqld[0x804513] /usr/sbin/mysqld[0x808432] /usr/sbin/mysqld[0x7db8bf] /usr/sbin/mysqld(_Z13rr_sequentialP11READ_RECORD+0x1d)[0x755aed] /usr/sbin/mysqld(_Z17mysql_alter_tableP3THDPcS1_P24st_ha_create_informationP10TABLE_LISTP10Alter_infojP8st_orderb+0x216b)[0x60399b] /usr/sbin/mysqld(_Z20mysql_recreate_tableP3THDP10TABLE_LIST+0x166)[0x604bd6] /usr/sbin/mysqld[0x647da1] /usr/sbin/mysqld(_ZN24Optimize_table_statement7executeEP3THD+0xde)[0x64891e] /usr/sbin/mysqld(_Z21mysql_execute_commandP3THD+0x1168)[0x59b558] /usr/sbin/mysqld(_Z11mysql_parseP3THDPcjP12Parser_state+0x30c)[0x5a132c] /usr/sbin/mysqld(_Z16dispatch_command19enum_server_commandP3THDPcj+0x1620)[0x5a2a00] /usr/sbin/mysqld(_Z24do_handle_one_connectionP3THD+0x14f)[0x63ce6f] /usr/sbin/mysqld(handle_one_connection+0x51)[0x63cf31] /lib/x86_64-linux-gnu/libpthread.so.0(+0x7e9a)[0x7f9cbb237e9a] /lib/x86_64-linux-gnu/libc.so.6(clone+0x6d)[0x7f9cbaf63cbd] Trying to get some variables. Some pointers may be invalid and cause the dump to abort. Query (7f6300004b60): is an invalid pointer Connection ID (thread ID): 876 Status: NOT_KILLED You may download the Percona Server operations manual by visiting http://www.percona.com/software/percona-server/. You may find information in the manual which will help you identify the cause of the crash. 121115 22:31:07 [Note] Plugin 'FEDERATED' is disabled. 121115 22:31:07 InnoDB: The InnoDB memory heap is disabled 121115 22:31:07 InnoDB: Mutexes and rw_locks use GCC atomic builtins
.. Then it recovered , without a reboot this time. from the log, what would cause this?
I am currently running a dump to see if the problem resurfaces. - mysqldump completed fine. I am now trying to restore the entire database from the dump.
edit: data partition is all in / since this is a hosted, defaulted file system unfortunately:
Filesystem Size Used Avail Use% Mounted on /dev/vda3 742G 445G 260G 64% / udev 121G 4.0K 121G 1% /dev tmpfs 49G 248K 49G 1% /run none 5.0M 0 5.0M 0% /run/lock none 121G 0 121G 0% /run/shm /dev/vda1 99M 54M 40M 58% /boot
[client] port = 3306 socket = /var/run/mysqld/mysqld.sock [mysqld_safe] socket = /var/run/mysqld/mysqld.sock nice = 0 [mysqld] skip-name-resolve innodb_file_per_table default_storage_engine=InnoDB user = mysql socket = /var/run/mysqld/mysqld.sock port = 3306 basedir = /usr datadir = /data/mysql tmpdir = /tmp skip-external-locking key_buffer = 512M max_allowed_packet = 128M thread_stack = 192K thread_cache_size = 64 myisam-recover = BACKUP max_connections = 500 table_cache = 812 table_definition_cache = 812 #query_cache_limit = 4M #query_cache_size = 512M join_buffer_size = 512K innodb_additional_mem_pool_size = 20M innodb_buffer_pool_size = 196G #innodb_file_io_threads = 4 #innodb_thread_concurrency = 12 innodb_flush_log_at_trx_commit = 1 innodb_log_buffer_size = 8M innodb_log_file_size = 1024M innodb_log_files_in_group = 2 innodb_max_dirty_pages_pct = 90 innodb_lock_wait_timeout = 120 log_error = /var/log/mysql/error.log long_query_time = 5 slow_query_log = 1 slow_query_log_file = /var/log/mysql/slowlog.log [mysqldump] quick quote-names max_allowed_packet = 16M [mysql] [isamchk] key_buffer = 16M
EDIT: the mysqldump completed without issues. Why would these crashes occur on an alter table?