I'm installing SQL Server on Windows Home Server. It failed. It think it is because when it load the master DB it doesn't understand NTFS tombstones--the windows event log seems to think the system has an E: drive and there isn't.

Do any commands exist to check to see if file is a tombstone and where the real file is being held?

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If these tombstones are in fact NTFS reparse points or junctions, you might want to try one of the tools mentioned in this KB article: http://support.microsoft.com/kb/205524

There's also sysinternals (well, Microsoft) tool called Junction that might help: http://technet.microsoft.com/en-us/sysinternals/bb896768.aspx

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