You can use diskpart to do this. It's a little involved but it also prevents you from putting another utility on the server.
Commands:
C:\>diskpart
DISKPART>list disk
Disk ### Status Size Free Dyn Gpt
-------- ------------- ------- ------- --- ---
Disk 0 Online 232 GB 9 MB
Disk 1 Online 232 GB 1024 KB
DISKPART>Select disk 1
DISKPART> list partition
Partition ### Type Size Offset
------------- ---------------- ------- -------
Partition 1 Primary 232 GB 31 KB
DISKPART> select Partition 1
Partition 1 is now the selected partition.
DISKPART> FILESYSTEMS
Current File System
Type : NTFS
Allocation Unit Size : 4096
Flags : 00000000
File Systems Supported for Formatting
Type : NTFS (Default)
Allocation Unit Sizes: 512, 1024, 2048, 4096 (Default), 8192, 16K, 32K, 64K
DISKPART>
You want the "Allocation unit Size" entry.