Ok, it was my mistake. Some how I missed to uncomment the EOLStyleFromMimeTypeSetter() when migrating from cvs2svn. It is a week ago almost, and many changes has been commited, so a new migration is not an option.
What do I do now? I have manually set the property
native on some projects, but only in trunk (IDEA helps me here doing it recursively). It takes a long time, and still I am missing all the branches.
Any good ideas?
The repository is placed on a linux.