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Cloning instance - Original kernel not available when creating AMI

I have a EC2 Ubuntu server on Amazon cloud and I'm trying to clone an instance "X" by creating a snapshot of the instance and creating an AMI from that snapshot. The problem is: When creating the AMI, ...
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EC2 AMI, does it mean state or just the program files and OS?

I was wondering if creating an EC2 AMI backup, which means taking a snapshot would just save the OS, along with its settings or say, if a program were running and during that I take an EC2 AMI ...