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Multiple sites on server but only one is down. Possible DNS issue?

I have several sites on a VPS server and one of the sites randomly went down earlier (500 error). The site is hosted on a subdomain of another website that is hosted elsewhere. So, the site that is ...
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NS server selection (mixed glue/non-glue NS from the parent zone)

Apart from the source code, there seems to be virtually no public information on the web of how BIND and djbdns, amongst other recursive resolvers, select which NS servers they will query as part of ...
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Setting alias for DynDNS domain

I've created DynDNS domain for testing my local sites, and i'm having trouble with pointing to root domain. From my registrar (GoDaddy) I've created a CNAME for www to point my example.dyndns.com so ...