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I've been using option exactarch=1 in /etc/yum.conf for some time, and it has worked for me. It still allows you to manually specify arch, but if you don't, it install only x86_64, not both. According to el6 manual, yum.conf(5): exactarch Either ‘1’ or ‘0’. Set to ‘1’ to make yum update only update the architectures of packages ...

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