I submit a job to SGE using the qsub command and get the error:
qsub: Unknown option
What unknown option?
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1perhaps giving the submission file would help diagnose the problem?– Bruce BeckerOct 23, 2018 at 12:02
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@BruceBecker, I answered this myself. The answer shows the offending line in the submission file.– John McGeheeOct 24, 2018 at 17:55
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1 Answer
You can specify qsub command line options within the script on lines beginning with #$. For example:
#$ -S /bin/bash
If #$ is not followed by a valid qsub option:
#$ -invalid_qsub_option
You get the unhelpful message:
qsub: Unknown option
If you get this message, search the script you are submitting for #$ and make sure it is followed by a valid qsub command line option.
If you are really must keep your lines beginning with #$, you can specify a different prefix string using the qsub -C command line option.