We're running a (cPanel/WHM based) server which contains mainly PHP applications. They are executed with the permissions of their owner with the suExec component of Apache.
We're looking into moving some of our core applications to Java, running in Tomcat (with Apache proxying), which can apparently be easily installed from within WHM. However, is there a way to preserve the suExec functionality there, so Java applications also get executed with the correct permissions?