I have a single server with both WSUS and SCCM 2012 R2 installed. I'm pretty sure everything is configured correctly. The only errors I'm seeing in the wsyncmgr.log file when I do a full synchronization relates to problems downloading EULA's for IE11 which is another issue I'll deal with later.
Right now the problem I'm wrestling with is that not all updates seem to be synchronizing between WSUS and SCCM. For example, when I go into WSUS and search for a particular MS bulletin number (which I wont mention for security reasons). I can find the Update in the WSUS console but, even after a full sync in SCCM I cannot find it under All Software Updates.
Does anyone have any suggestions of where to look?