This problem is a bit complex, but i will try to explain as best possible.
I am hosted on Bluehots, and I have a Dedicated ip address with them. they allow hosting multiple domains, so i have multiple hosted in one account.
The way they are setup is that domain1.com is the primary domain and is the root .../public_html/ all other domains... domain2.com, domain3.com etc. are hosted within the root i.e. /public_html/domain2/ and /public_html/domain3/ etc.
I can even access the content on domain2.com by going to domain1.com/domain2/ (which i redirect to domain2.com with .htaccess.
Whithout babbling on, here is the problem: I want to install a ssl certificate to make domain1.com more secure, and since i have a dedicated ip it should be possible. But i just realized that i have other domains also hosted within my account so I foresee a problem. I am just not sure if i can still install a SSL cert or not.