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SCCM - can't reitre application due to active deployment?

SCCM 1706 has been out of support since 2018: https://learn.microsoft.com/en-us/mem/configmgr/core/servers/manage/updates#historical-versions. It's definitely time to upgrade.
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Deployment PHP with OpCache

Thanks for the answer and link above. Current solution is: Do not call opcache_reset after deploy. Set bigger value for option opcache.memory_consumption. I do opcache_reset in night as cron job. ...
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IIS -- procedure to ensure new version of deployed web app is the one actually used

Since you are working on ASP.NET 4.x (and ASP.NET Core), the most convenient way is to use app_offline.htm to trigger a full reload the web contents, and Microsoft has it well documented in, https://...
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IIS -- procedure to ensure new version of deployed web app is the one actually used

Recycling (i.e. restarting) the application pool should be enough for it to pick up the newly deployed files. This can be easily done with PowerShell: https://learn.microsoft.com/en-us/powershell/...
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